Repository 'scythe'
http://toolshed.g2.bx.psu.edu/view/nikhil-joshi/scythe
scythe
unrestricted
A very simple adapter trimmer
Scythe uses a Naive Bayesian approach to classify contaminant
substrings in sequence reads. It considers quality information, which
can make it robust in picking out 3'-end adapters, which often include
poor quality bases.
7:e01c19b11261
nikhil-joshi
True
115

Contents of this repository

Name Description Version
Scythe Trimming adapters/contaminants using a Naive Bayesian classifier 1.0.0

Automated tool test results

Time tested: 2014-04-20 15:12:20
System:
Architecture:
Python version:
Galaxy revision:
Galaxy database version:
Tool shed revision: 13123:e6876f691854
Tool shed database version: 22
Tool shed mercurial version: 2.2.3
Tool id: scythe
Tool version: 1.0.0
Tool guid: toolshed.g2.bx.psu.edu/repos/nikhil-joshi/scythe/scythe/1.0.0
Missing components:
Repository does not have a test-data directory. Functional test definitions missing for scythe.

Categories
Variant Analysis
Sequence Analysis
Next Gen Mappers
Assembly