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Repository 'roche454_toolsuite'
http://toolshed.g2.bx.psu.edu/view/edward-kirton/roche454_toolsuite
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This suite contains Roche/454's Newbler and sff-fastq converter
Roche/454 Newbler assembler and mapper, sfffile utility, and sff:fastq converter.
3:bf1f8bc4abe6
edward-kirton
True
386

Contents of this repository

Name Description Version
Sff to Fastq Converter 1.0.0
Sff File Select reads to include or exclude from one or more input Sff files 1.0.0
runAssembly De novo assembly of Roche/454 reads using Newbler 1.0.1
runAssembly cDNA De novo assembly of Roche/454 cDNA reads using Newbler 1.0.1
runMapping Map Roche/454 reads to a reference using Newbler 1.0.1
runMapping cDNA Map Roche/454 reads to a reference using Newbler 1.0.1

Automated tool test results

Time tested: 2014-04-23 15:15:02
System:
Architecture:
Python version:
Galaxy revision:
Galaxy database version:
Tool shed revision: 13123:e6876f691854
Tool shed database version: 22
Tool shed mercurial version: 2.2.3
Tool id: sff_to_fastq
Tool version: 1.0.0
Tool guid: toolshed.g2.bx.psu.edu/repos/edward-kirton/roche454_toolsuite/sff_to_fastq/1.0.0
Missing components:
Repository does not have a test-data directory. Functional test definitions missing for sff_to_fastq.
Tool id: sfffile
Tool version: 1.0.0
Tool guid: toolshed.g2.bx.psu.edu/repos/edward-kirton/roche454_toolsuite/sfffile/1.0.0
Missing components:
Repository does not have a test-data directory. Functional test definitions missing for sfffile.
Tool id: runAssembly
Tool version: 1.0.1
Tool guid: toolshed.g2.bx.psu.edu/repos/edward-kirton/roche454_toolsuite/runAssembly/1.0.1
Missing components:
Repository does not have a test-data directory. Functional test definitions missing for runAssembly.
Tool id: runAssembly_cDNA
Tool version: 1.0.1
Tool guid: toolshed.g2.bx.psu.edu/repos/edward-kirton/roche454_toolsuite/runAssembly_cDNA/1.0.1
Missing components:
Repository does not have a test-data directory. Functional test definitions missing for runAssembly_cDNA.
Tool id: runMapping
Tool version: 1.0.1
Tool guid: toolshed.g2.bx.psu.edu/repos/edward-kirton/roche454_toolsuite/runMapping/1.0.1
Missing components:
Repository does not have a test-data directory. Functional test definitions missing for runMapping.
Tool id: runMapping_cDNA
Tool version: 1.0.1
Tool guid: toolshed.g2.bx.psu.edu/repos/edward-kirton/roche454_toolsuite/runMapping_cDNA/1.0.1
Missing components:
Repository does not have a test-data directory. Functional test definitions missing for runMapping_cDNA.

Categories
Assembly