Repository 'ems_variant_density_mapping'
http://toolshed.g2.bx.psu.edu/view/gregory-minevich/ems_variant_density_mapping
unrestricted
Map a mutation by linkage to regions of high mutation density using WGS data
Following the approach detailed in Zuryn et al., Genetics 2010, this tool plots histograms of SNP density in a mutant C.elegans strain that has been backcrossed to its (pre-mutagenesis) starting strain. 

This tool is part of the CloudMap pipeline for analysis of mutant genome sequences. For further details, please see Gregory Minevich, Danny Park, Richard J. Poole, Daniel Blankenberg, Anton Nekrutenko, and Oliver Hobert.  CloudMap: A Cloud-based Pipeline for Analysis of Mutant Genome Sequences. (2012 In Preparation)
12:5cc9b35b5a52
gregory-minevich
True
292

Contents of this repository

Name Description Version
CloudMap: EMS Variant Density Mapping Map a mutation by linkage to regions of high mutation density using WGS data 1.0.0

Automated tool test results

Time tested: 2014-04-24 15:11:47
System:
Architecture:
Python version:
Galaxy revision:
Galaxy database version:
Tool shed revision: 13123:e6876f691854
Tool shed database version: 22
Tool shed mercurial version: 2.2.3
Tool id: ems_variant_density_mapping
Tool version: 1.0.0
Tool guid: toolshed.g2.bx.psu.edu/repos/gregory-minevich/ems_variant_density_mapping/ems_variant_density_mapping/1.0.0
Missing components:
Repository does not have a test-data directory. Functional test definitions missing for ems_variant_density_mapping.

Categories
Visualization
Variant Analysis
Sequence Analysis
Next Gen Mappers