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Repository 'metaphlan'
http://toolshed.g2.bx.psu.edu/view/dannon/metaphlan
metaphlan
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MetaPhlAn wrapper for Metagenomic Phylogenetic Analysis
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data. MetaPhlAn relies on unique clade-specific marker genes identified from reference genomes, allowing orders of magnitude speedups and unambiguous taxonomic assignments.
6:e951f9d38339
dannon
True
369
Dependencies of this repository

Name Version Type
metaphlan 1.7.0 package

Contents of this repository

Name Description Version
MetaPhlAn to PhyloXML converter 1.0.0
MetaPhlAn to Krona Converter 1.0.0
MetaPhlAn Metagenomic Phylogenetic Analysis 1.7.0

Automated tool test results

Time tested: 2014-04-20 15:10:58
System:
Architecture:
Python version:
Galaxy revision:
Galaxy database version:
Tool shed revision: 13123:e6876f691854
Tool shed database version: 22
Tool shed mercurial version: 2.2.3
Tool id: meta_to_phylo
Tool version: 1.0.0
Tool guid: toolshed.g2.bx.psu.edu/repos/dannon/metaphlan/meta_to_phylo/1.0.0
Missing components:
Repository does not have a test-data directory. Functional test definitions missing for meta_to_phylo.
Tool id: meta_to_krona
Tool version: 1.0.0
Tool guid: toolshed.g2.bx.psu.edu/repos/dannon/metaphlan/meta_to_krona/1.0.0
Missing components:
Repository does not have a test-data directory. Functional test definitions missing for meta_to_krona.
Tool id: metaphlan
Tool version: 1.7.0
Tool guid: toolshed.g2.bx.psu.edu/repos/dannon/metaphlan/metaphlan/1.7.0
Missing components:
Repository does not have a test-data directory. Functional test definitions missing for metaphlan.

Categories
Metagenomics