Repository 'tophit_namefilter'
http://toolshed.g2.bx.psu.edu/view/abossers/tophit_namefilter
unrestricted
Simple filter to keep N occurrences of lines in a file
X Simple filter to keep just the TOPHIT / first occurrence of some identifier
X usefull for keeping only the first tophit in blast when multiple hits are returned
X
X Please be aware that NO additional filtering or checking is done on for instance
X E values of BLAST hits. Tophit = FIRST hit...not necessarily the best..
X
X input list/table having some groupable identifier
X input the column number to filter on (column number starts at 1)
X input number of occurrences to keep
X       note that the hits are displayed in order of occurrence
X       and NOT sorted on given column!
X column splitter (default TAB)
X Note that: splitting on tab:    Xt
X            splitting on pipe:   XX
X            combined splits: -XXX (splits on - OR X)
X
X output the same table having only the FIRST occurrence of the identifier.
X
0:9f1fe290345e
abossers
True
196

Contents of this repository

Name Description Version
TopHit filter Simple filter to keep N occurrences of lines in a file 0.1.Alx

Automated tool test results

Time tested: 2014-04-22 15:11:38
System:
Architecture:
Python version:
Galaxy revision:
Galaxy database version:
Tool shed revision: 13123:e6876f691854
Tool shed database version: 22
Tool shed mercurial version: 2.2.3
Tool id: TopHit_namefilter
Tool version: 0.1.Alx
Tool guid: toolshed.g2.bx.psu.edu/repos/abossers/tophit_namefilter/TopHit_namefilter/0.1.Alx
Missing components:
Repository does not have a test-data directory. Functional test definitions missing for TopHit_namefilter.

Categories
Sequence Analysis
Text Manipulation