| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.12.0.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.2.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.1.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.0.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.0.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.0.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.0.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo/meme_fimo/4.11.0.0 |
| meme_fimo |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| graphicsmagick | 1.3.23 | package |
| meme | 4.11.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
non_commercial_use: True fasta_type|fasta_type_selector: history input_motifs: meme_output_xml_1.xml options_type|options_type_selector: basic fasta_type|input_database: phiX.fasta |
html_outfile: fimo_output_html_1.html txt_outfile: fimo_output_txt_1.txt gff_outfile: fimo_output_almost-gff_1.txt xml_outfile: fimo_output_xml_1.xml interval_outfile: fimo_output_interval_1.txt |
meme_output_xml_1.xml phiX.fasta fimo_output_html_1.html fimo_output_txt_1.txt fimo_output_almost-gff_1.txt fimo_output_xml_1.xml fimo_output_interval_1.txt |
| Test-2 |
non_commercial_use: True fasta_type|fasta_type_selector: history input_motifs: meme_output_xml_1.xml options_type|options_type_selector: advanced fasta_type|input_database: phiX.fasta |
html_outfile: fimo_output_html_2.html txt_outfile: fimo_output_txt_2.txt gff_outfile: fimo_output_almost-gff_2.txt xml_outfile: fimo_output_xml_2.xml interval_outfile: fimo_output_interval_2.txt |
meme_output_xml_1.xml phiX.fasta fimo_output_html_2.html fimo_output_txt_2.txt fimo_output_almost-gff_2.txt fimo_output_xml_2.xml fimo_output_interval_2.txt |
| Test-3 |
input_motifs: meme_output_xml_1.xml options_type|output_separate_motifs: yes options_type|parse_genomic_coord_cond|remove_duplicate_coords: yes options_type|options_type_selector: advanced fasta_type|fasta_type_selector: history non_commercial_use: True options_type|parse_genomic_coord_cond|parse_genomic_coord: yes fasta_type|input_database: phiX.fasta |
html_outfile: fimo_output_html_2.html txt_outfile: fimo_output_txt_2.txt xml_outfile: fimo_output_xml_2.xml interval_outfile: fimo_output_interval_2.txt |
meme_output_xml_1.xml phiX.fasta fimo_output_html_2.html fimo_output_txt_2.txt fimo_output_xml_2.xml fimo_output_interval_2.txt |