| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.4.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.3.1.0 (this tool) |
| hicexplorer_chicsignificantinteractions |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| hicexplorer | 3.3.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
filter_conditional|loosePvalue: 0.5 filter_conditional|filter_selector: optionLoosePvalue batchmode_conditional|batchmode_selector: optionBatchmode rangeUpstream: 200000 backgroundModelFile: cHi-C/background.bed batchmode_conditional|computeSampleNumber: 2 interactionFiles: ['cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed', 'cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed', 'cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed', 'cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed', 'cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed', 'cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed'] rangeDownstream: 200000 batchmode_conditional|interactionFilesOrderFile: cHi-C/chicViewpoint/fileNames_two_matrices.txt pvalue: 0.2 |
attributes: name attributes: name |
cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed cHi-C/chicViewpoint/fileNames_two_matrices.txt cHi-C/background.bed name |
| Test-2 |
filter_conditional|filter_selector: optionXfold filter_conditional|xfold: 1.5 batchmode_conditional|batchmode_selector: optionSinglemode interactionFiles: ['cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed'] backgroundModelFile: cHi-C/background.bed batchmode_conditional|computeSampleNumber: 1 rangeUpstream: 200000 rangeDownstream: 200000 pvalue: 0.2 |
cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed cHi-C/background.bed |