Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy4 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy3 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.19+galaxy0 |
anndata_import |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
anndata | 0.6.22.post1 | package |
loompy | 2.0.17 | package |
h5py | 2.9.0 | package |
scanpy | 1.4.4.post1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
hd5_format|in|obs_names: CellID hd5_format|in|input: krumsiek11.loom hd5_format|in|sparse: True hd5_format|in|var_names: Gene hd5_format|in|cleanup: False hd5_format|in|x_name: spliced hd5_format|in|adata_format: loom |
attributes: name |
krumsiek11.loom name |
Test-2 |
hd5_format|in|first_column_names: True hd5_format|in|input: adata.csv hd5_format|in|adata_format: tabular |
attributes: name |
adata.csv name |
Test-3 |
hd5_format|in|first_column_names: True hd5_format|in|input: adata.tsv hd5_format|in|adata_format: tabular |
attributes: name |
adata.tsv name |
Test-4 |
hd5_format|in|input: umi_tools.tsv hd5_format|filetype: anndata hd5_format|in|adata_format: umi_tools |
attributes: name |
umi_tools.tsv name |
Test-5 |
hd5_format|other_files: secondlayer.tsv hd5_format|mainmatrix: firstlayer.tsv hd5_format|coldata: cols.tsv hd5_format|filetype: loom hd5_format|rowdata: rows.tsv |
attributes: name |
firstlayer.tsv secondlayer.tsv cols.tsv rows.tsv name |
Test-6 |
hd5_format|in|input: dropletutils_input.h5 hd5_format|filetype: anndata hd5_format|in|adata_format: 10x_h5 |
attributes: name |
dropletutils_input.h5 name |