Repository revision
0:3d1d965b6423

Repository 'vegan_rarefaction'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/vegan_rarefaction

Vegan Rarefaction tool metadata
Miscellaneous
curve and statistics
vegan_rarefaction
toolshed.g2.bx.psu.edu/repos/iuc/vegan_rarefaction/vegan_rarefaction/0.0.2
0.0.2
Rscript -e 'library(vegan)' 2>&1 > /dev/null | grep 'This is vegan'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/vegan_rarefaction/vegan_rarefaction/0.0.3
toolshed.g2.bx.psu.edu/repos/iuc/vegan_rarefaction/vegan_rarefaction/0.0.2 (this tool)
vegan_rarefaction
Requirements (dependencies defined in the <requirements> tag set)
name version type
R 3.2.1 package
vegan 2.3-0 package
Functional tests
name inputs outputs required files
Test-1 xlab: Sample Size
label: True
sample_size:
step_size: 1
sample_columns: 2
ylab: Species
input_abundance: vegan_in.tabular
species_column: 6
output_species_count: vegan_output_species_count.tabular
output_species_frequency: vegan_output_species_frequency.tabular
output_richness: vegan_output_richness.tabular
output_species_probabilities: vegan_output_species_probabilities.tabular
output_slope: vegan_output_slope.tabular
vegan_in.tabular
vegan_output_species_count.tabular
vegan_output_species_frequency.tabular
vegan_output_richness.tabular
vegan_output_species_probabilities.tabular
vegan_output_slope.tabular