Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks_cstacks/stacks_cstacks/1.46.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks_cstacks/stacks_cstacks/1.42.0 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks_cstacks/stacks_cstacks/1.40.2 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks_cstacks/stacks_cstacks/1.40.0 |
stacks_cstacks |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
stacks | 1.46 | package |
velvet | 1.2.10 | package |
stacks_summary | 1.1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_col: list collection |
name: value name: value name: value name: value name: value |
genotypes/batch_1.catalog.alleles.tsv genotypes/batch_1.catalog.snps.tsv genotypes/batch_1.catalog.tags.tsv genotypes/PopA_01.alleles.tsv genotypes/PopA_01.matches.tsv genotypes/PopA_01.snps.tsv genotypes/PopA_01.tags.tsv genotypes/PopA_02.alleles.tsv genotypes/PopA_02.matches.tsv genotypes/PopA_02.snps.tsv genotypes/PopA_02.tags.tsv value |
Test-2 |
input_col: list collection gapped|use_gapped: yes |
name: value name: value name: value name: value name: value |
genotypes/batch_1.catalog.alleles.tsv genotypes/batch_1.catalog.snps.tsv genotypes/batch_1.catalog.tags.tsv genotypes/PopA_01.alleles.tsv genotypes/PopA_01.matches.tsv genotypes/PopA_01.snps.tsv genotypes/PopA_01.tags.tsv genotypes/PopA_02.alleles.tsv genotypes/PopA_02.matches.tsv genotypes/PopA_02.snps.tsv genotypes/PopA_02.tags.tsv value |
Test-3 |
input_col: list collection popmap: denovo_map/popmap_cstacks.tsv |
name: value name: value name: value name: value name: value |
genotypes/batch_1.catalog.alleles.tsv genotypes/batch_1.catalog.snps.tsv genotypes/batch_1.catalog.tags.tsv genotypes/PopA_01.alleles.tsv genotypes/PopA_01.matches.tsv genotypes/PopA_01.snps.tsv genotypes/PopA_01.tags.tsv genotypes/PopA_02.alleles.tsv genotypes/PopA_02.matches.tsv genotypes/PopA_02.snps.tsv genotypes/PopA_02.tags.tsv denovo_map/popmap_cstacks.tsv value |