| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_extract/umi_tools_extract/0.5.0.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_extract/umi_tools_extract/0.4.4.0 (this tool) |
| umi_tools_extract |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| umi_tools | 0.4.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
quality|quality_selector: true input_type|type: single bc_pattern: XXXNNN quality|quality_filter_threshold: 10 quality|quality_encoding: phred33 prime3: False input_type|input_single: t_R1.fastq |
out: out_SE.fastq out_log: out_single.log |
t_R1.fastq out_SE.fastq out_single.log |
| Test-2 |
input_type|input_read1: t_R1.fastq.gz input_type|input_read2: t_R2.fastq.gz bc_pattern: NNNXXX input_type|type: paired |
out1: out_R1.fastq.gz out2: out_R2.fastq.gz out_log: out_paired.log |
t_R1.fastq.gz t_R2.fastq.gz out_R1.fastq.gz out_R2.fastq.gz out_paired.log |