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msPurity.averageFragSpectra tool metadata

Miscellaneous

Name: msPurity.averageFragSpectra

Description: Average and filter LC-MS/MS fragmentation spectra (Inter, Intra or All)

Id: mspurity_averagefragspectra

Guid: toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.16.2+galaxy1

Version: 1.16.2+galaxy1

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.16.2+galaxy1 (this tool)

toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.16.2+galaxy0

toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.12.2+galaxy3

toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.12.2+galaxy2

toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.12.2+galaxy1

toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.12.2+galaxy0

toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.12.0+galaxy1

toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.12.0+galaxy0

mspurity_averagefragspectra

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

bioconductor-mspurity

1.16.2

package

bioconductor-camera

1.46.0

package

bioconductor-xcms

3.12.0

package

bioconductor-mspuritydata

1.16.0

package

r-optparse

1.6.6

package

r-rpostgres

1.3.1

package

r-rmysql

0.10.21

package

Functional tests

name

inputs

outputs

required files

Test-1

pa: filterFragSpectra_output.RData
av_level: intra

name: value
name: value

filterFragSpectra_output.RData
value

Test-2

pa: averageFragSpectra_output_intra.RData
av_level: inter

name: value
name: value

averageFragSpectra_output_intra.RData
value

Test-3

pa: frag4feature_output.RData
av_level: all

name: value
name: value

frag4feature_output.RData
value

Test-4

pa: averageFragSpectra_output_inter.RData
av_level: all

name: value
name: value

averageFragSpectra_output_inter.RData
value