Repository revision
2:9a599f278852

Repository 'reactome_pathwaymatcher'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/reactome_pathwaymatcher

Pathway Matcher tool metadata
Miscellaneous
PathwayMatcher is a software tool to search for pathways related to a list of proteins in Reactome.
reactome_pathwaymatcher
toolshed.g2.bx.psu.edu/repos/galaxyp/reactome_pathwaymatcher/reactome_pathwaymatcher/1.8.1.2
1.8.1.2
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/reactome_pathwaymatcher/reactome_pathwaymatcher/1.9.1.1
toolshed.g2.bx.psu.edu/repos/galaxyp/reactome_pathwaymatcher/reactome_pathwaymatcher/1.8.1.2 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/reactome_pathwaymatcher/reactome_pathwaymatcher/1.8.1.0
toolshed.g2.bx.psu.edu/repos/galaxyp/reactome_pathwaymatcher/reactome_pathwaymatcher/1.8.0
reactome_pathwaymatcher
Requirements (dependencies defined in the <requirements> tag set)
name version type
pathwaymatcher 1.8.1 package
zip 3.0 package
Functional tests
name inputs outputs required files
Test-1 input_types_0|input_type|input_type_selector: gene
input_types_0|input_type|input_gene: genes.txt
attributes: name
genes.txt
name
Test-2 input_types_0|input_type|input_type_selector: proteoforms
input_types_0|input_type|input_proteoforms: proteoforms.txt
output_options|output_graphs: ['gg', 'gu', 'gp']
proteoforms.txt