Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.4.3.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.4.2.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.4.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.3.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.1.4.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.1.2.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.0.1 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.0.0 |
hicexplorer_hicpca |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
hicexplorer | 3.4.2 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
outputFormat: bigwig matrix_h5_cooler: small_test_matrix.cool extra_track_conditional|extra_track_selection: |
attributes: name attributes: name |
small_test_matrix.cool name |
Test-2 |
matrix_h5_cooler: small_test_matrix.cool outputFormat: bigwig ligation_factor: True extra_track_conditional|extra_track_selection: |
attributes: name attributes: name |
small_test_matrix.cool name |
Test-3 |
outputFormat: bigwig ignoreMaskedBins: True matrix_h5_cooler: small_test_matrix.cool extra_track_conditional|extra_track_selection: |
attributes: name attributes: name |
small_test_matrix.cool name |
Test-4 |
extra_track_conditional|extraTrack: dm3_genes.bed.gz outputFormat: bigwig chromosome_list_0|chromosomes: chrX chromosome_list_1|chromosomes: chrXHet extra_track_conditional|extra_track_selection: gene_density matrix_h5_cooler: small_test_matrix.h5 |
attributes: name attributes: name |
small_test_matrix.h5 dm3_genes.bed.gz name |
Test-5 |
obsexpMatrix: True outputFormat: bigwig chromosome_list_0|chromosomes: chrX chromosome_list_1|chromosomes: chrXHet extra_track_conditional|extra_track_selection: pearsonMatrix: True matrix_h5_cooler: small_test_matrix.h5 |
attributes: name attributes: name attributes: name attributes: name |
small_test_matrix.h5 name |