Repository revision
8:c5ff15011115

Repository 'ncbi_eutils_efetch'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_efetch

NCBI EFetch tool metadata
Miscellaneous
NCBI EFetch
fetch records from NCBI
ncbi_eutils_efetch
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_efetch/ncbi_eutils_efetch/1.70+galaxy2
1.70+galaxy2
python efetch.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_efetch/ncbi_eutils_efetch/1.70+galaxy3
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_efetch/ncbi_eutils_efetch/1.70+galaxy2 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_efetch/ncbi_eutils_efetch/1.70
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_efetch/ncbi_eutils_efetch/1.3
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_efetch/ncbi_eutils_efetch/1.2
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_efetch/ncbi_eutils_efetch/1.1
ncbi_eutils_efetch
Requirements (dependencies defined in the <requirements> tag set)
name version type
python 3 package
biopython 1.70 package
Functional tests
name inputs outputs required files
Test-1 query_source|id_list: 10239
query_source|qss: id_list
db|output_format: none-xml-xml
db|db_select: taxonomy
Test-2 query_source|id_file: efetchin.tabular
query_source|qss: id_file
db|output_format: fasta-text-fasta
db|db_select: nuccore
efetchin.tabular