Repository revision
8:df8e4e54d367

Repository 'raceid_inspecttrajectory'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory

Lineage Branch Analysis using StemID tool metadata
Miscellaneous
Lineage Branch Analysis using StemID
inspects branches of a lineage tree
raceid_inspecttrajectory
toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/0.2.3+galaxy2
0.2.3+galaxy2
Rscript '$__tool_directory__/scripts/trajectoryinspect.R' 2>&1 | head -1 | cut -d' ' -f 2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/0.2.3+galaxy3
toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/0.2.3+galaxy2 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/0.2.3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/0.2.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/3.1
toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/3.0.2.1
raceid_inspecttrajectory
Requirements (dependencies defined in the <requirements> tag set)
name version type
r-raceid 0.2.3 package
Functional tests
name inputs outputs required files
Test-1 inputrds: out_traject_default.ltree.rdat
 name: value
 out_traject_default.ltree.rdat
value
Test-2 inputrds: out_traject_default.ltree.rdat
trjsid|basic|i: 3
trjsid|basic|br: 1,3,8
trjsid|basic|doit: yes
 name: value
name: value
 out_traject_default.ltree.rdat
value
Test-3 inputrds: out_traject_default.ltree.rdat
trjfid|basic|cellsfromz: 2,1,4
trjfid|basic|use|filterset_minexpr: 2
trjfid|basic|use|getsom_nb: 1000
trjfid|basic|use|getsom_alpha: 0.5
trjfid|basic|use|plotheat_xlab: True
trjfid|basic|use|def: no
trjfid|basic|doit: yes
 name: value
 out_traject_default.ltree.rdat
value
Test-4 inputrds: out_traject_default.ltree.rdat
trjfid|basic|cellsfromz: 2,1,4
trjfid|basic|som|use|def: no
trjfid|basic|som|doit: yes
trjfid|basic|doit: yes
 name: value
 out_traject_default.ltree.rdat
value
Test-5 inputrds: out_traject_default.ltree.rdat
trjsid|basic|i: 5
trjsid|basic|br: 6,5,3
trjsid|basic|use|zscore: True
trjsid|basic|use|ndiffgenes: 14
trjsid|basic|use|def: no
trjsid|basic|doit: yes
trjfid|basic|cellsfromz: 3,9,2
trjfid|basic|use|filterset_minexpr: 1
trjfid|basic|use|filterset_minnumber: 2
trjfid|basic|use|procsom_corthr: 0.5
trjfid|basic|use|procsom_minsom: 5
trjfid|basic|use|plotheat_ygrid: True
trjfid|basic|use|def: no
trjfid|basic|som|use_genes|use_genes: Clca4,Mki67,Defa24,Ybx1,Vasp,Apoa1
trjfid|basic|som|use_genes|typer: genelist
trjfid|basic|som|doit: yes
trjfid|basic|doit: yes
 name: value
name: value
 out_traject_default.ltree.rdat
value