Repository revision
3:e13b801516dd

Repository 'hamronize_tool'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/hamronize_tool

hamronize tool metadata
Miscellaneous
hamronize
parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
hamronize_tool
toolshed.g2.bx.psu.edu/repos/iuc/hamronize_tool/hamronize_tool/1.0.3+galaxy1
1.0.3+galaxy1
hamronize --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/hamronize_tool/hamronize_tool/1.1.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hamronize_tool/hamronize_tool/1.0.3+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/hamronize_tool/hamronize_tool/1.0.3+galaxy0
hamronize_tool
Requirements (dependencies defined in the <requirements> tag set)
name version type
hamronization 1.0.3 package
Functional tests
name inputs outputs required files
Test-1 report: abricate/report.tsv
select_tool|tool: abricate
output_format: tsv
analysis_software_version: tool_v_1
reference_database_version: db_v_1
name: value
abricate/report.tsv
value
Test-2 report: abricate/report.tsv
select_tool|tool: abricate
output_format: json
analysis_software_version: tool_v_1
reference_database_version: db_v_1
name: value
abricate/report.tsv
value
Test-3 report: ariba/report.tsv
select_tool|input_file_name: ariba_report
select_tool|reference_database_id: dbname
select_tool|tool: ariba
output_format: tsv
analysis_software_version: ariba_v1
reference_database_version: db_v_1
name: value
ariba/report.tsv
value
Test-4 report: rgi/rgi.txt
select_tool|input_file_name: rgi_report
select_tool|tool: rgi
output_format: tsv
analysis_software_version: rgi_v1
reference_database_version: card_v1
name: value
rgi/rgi.txt
value