| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/humann2_barplot/humann2_barplot/0.11.1.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/humann2_barplot/humann2_barplot/0.11.1.0 (this tool) |
| humann2_barplot |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| humann2 | 0.11.1 | package |
| matplotlib | 2.0.2 | package |
| numpy | 1.13.1 | package |
| scipy | 0.19.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
sort: none as_genera: False last_metadatum: STSite format: png height: 8 scaling: none focal_metadatum: STSite grid: False exclude_unclassified: False focal_feature: ANAGLYCOLYSIS-PWY input: hmp_pathabund.txt remove_zeroes: False width: 4 |
barplot_png: barplot1.png |
hmp_pathabund.txt barplot1.png |
| Test-2 |
sort: sum as_genera: False last_metadatum: STSite format: pdf height: 8 scaling: none focal_metadatum: STSite grid: False exclude_unclassified: False focal_feature: ANAGLYCOLYSIS-PWY input: hmp_pathabund.txt remove_zeroes: False width: 4 |
barplot_pdf: barplot2.pdf |
hmp_pathabund.txt barplot2.pdf |
| Test-3 |
sort: metadata as_genera: True last_metadatum: STSite format: svg height: 8 scaling: none focal_metadatum: STSite grid: True exclude_unclassified: True focal_feature: ANAGLYCOLYSIS-PWY input: hmp_pathabund.txt remove_zeroes: True width: 4 |
barplot_svg: barplot3.svg |
hmp_pathabund.txt barplot3.svg |
| Test-4 |
sort: sum top_strata: 12 as_genera: False last_metadatum: STSite format: png height: 8 scaling: normalize focal_metadatum: STSite grid: False exclude_unclassified: False focal_feature: ANAGLYCOLYSIS-PWY input: hmp_pathabund.txt remove_zeroes: False width: 4 |
barplot_png: barplot4.png |
hmp_pathabund.txt barplot4.png |