| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/recentrifuge/recentrifuge/1.10.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/recentrifuge/recentrifuge/1.9.1+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/recentrifuge/recentrifuge/1.9.1+galaxy0 |
| recentrifuge |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| recentrifuge | 1.9.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: kraken_test/kraken.out file_type|filetype: kraken database|database_name: test-db-2022 more_advanced_option|summary: AVOID |
name: value name: value name: value name: value |
kraken_test/kraken.out value |
| Test-2 |
input_file: centrifuge_test/centrifuge.out file_type|filetype: centrifuge database|database_name: test-db-2022 output_option|extra: CSV output_option|nohtml: True advanced_option|controls: 0 advanced_option|scoring: NORMA advanced_option|minscore_value: 1 advanced_option|avoidcross: True more_advanced_option|ctrlminscore: 1 more_advanced_option|summary: AVOID |
name: value name: value name: value |
centrifuge_test/centrifuge.out value |
| Test-3 |
input_file: kraken_test/kraken.out file_type|filetype: kraken database|database_name: test-db-2022 output_option|extra: TSV output_option|nohtml: True advanced_option|scoring: LOGLENGTH more_advanced_option|summary: ONLY more_advanced_option|strain: True |
name: value name: value name: value |
kraken_test/kraken.out value |
| Test-4 |
input_file: ['centrifuge_test/centrifuge.out', 'centrifuge_test/centrifuge_1.out', 'centrifuge_test/centrifuge_2.out'] file_type|filetype: centrifuge database|database_name: test-db-2022 output_option|extra: TSV output_option|no_logfile: True advanced_option|scoring: LENGTH more_advanced_option|summary: ADD more_advanced_option|strain: True |
name: value name: value name: value |
centrifuge_test/centrifuge.out centrifuge_test/centrifuge_1.out centrifuge_test/centrifuge_2.out value |