| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/2.1.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/2.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/2.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/1.1.4 |
| toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/1.1.3 |
| toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/1.1.2 |
| sam_to_bam |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
source|ref_file: chr_m.fasta source|input1: sam_to_bam_in1.sam source|index_source: history |
output1: sam_to_bam_out1.bam |
sam_to_bam_in1.sam chr_m.fasta sam_to_bam_out1.bam |
| Test-2 |
source|ref_file: chr_m.fasta source|input1: sam_to_bam_noheader_in2.sam source|index_source: history |
output1: sam_to_bam_out3.bam |
sam_to_bam_noheader_in2.sam chr_m.fasta sam_to_bam_out3.bam |