| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/clustalw/clustalw/2.1+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/clustalw/clustalw/2.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/clustalw/clustalw/0.1 |
| clustalw |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| clustalw | 2.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: rgClustal_testin.fasta type_conditional|dnarna: DNA outcontrol|outform: fasta out_order: ALIGNED range|mode: complete |
name: value name: value |
rgClustal_testin.fasta value |
| Test-2 |
input: rgClustal_testin.fasta type_conditional|algorithm_conditional|slow_pairwise_alignments|PWGAPOPEN: 2 type_conditional|algorithm_conditional|slow_pairwise_alignments|PWGAPEXT: 1 type_conditional|algorithm_conditional|selector: type_conditional|multiple_alignments|DNAMATRIX: IUB type_conditional|multiple_alignments|GAPOPEN: 2 type_conditional|multiple_alignments|GAPEXT: 1 type_conditional|multiple_alignments|ENDGAPS: True type_conditional|multiple_alignments|GAPDIST: 1 type_conditional|multiple_alignments|NOPGAP: True type_conditional|multiple_alignments|NOHGAP: True type_conditional|multiple_alignments|MAXDIV: 1 type_conditional|multiple_alignments|NEGATIVE: True type_conditional|multiple_alignments|TRANSWEIGHT: 1 type_conditional|dnarna: DNA tree_calculation|OUTPUTTREE: PHYLIP tree_calculation|KIMURA: True tree_calculation|TOSSGAPS: True out_order: ALIGNED |
name: value name: value |
rgClustal_testin.fasta value |
| Test-3 |
input: rgClustal_testin_prot.fasta type_conditional|algorithm_conditional|fast_pairwise_alignments|KTUPLE: 1 type_conditional|algorithm_conditional|fast_pairwise_alignments|TOPDIAGS: 1 type_conditional|algorithm_conditional|fast_pairwise_alignments|WINDOW: 2 type_conditional|algorithm_conditional|fast_pairwise_alignments|PAIRGAP: 2 type_conditional|algorithm_conditional|fast_pairwise_alignments|SCORE: PERCENT type_conditional|algorithm_conditional|selector: -QUICKTREE type_conditional|multiple_alignments|MATRIX: BLOSUM type_conditional|multiple_alignments|GAPOPEN: 3 type_conditional|multiple_alignments|GAPEXT: 1 type_conditional|multiple_alignments|ENDGAPS: True type_conditional|multiple_alignments|GAPDIST: 2 type_conditional|multiple_alignments|NOPGAP: True type_conditional|multiple_alignments|NOHGAP: True type_conditional|multiple_alignments|MAXDIV: 1 type_conditional|multiple_alignments|NEGATIVE: True type_conditional|multiple_alignments|TRANSWEIGHT: 1 type_conditional|dnarna: PROTEIN tree_calculation|OUTPUTTREE: PHYLIP tree_calculation|KIMURA: False tree_calculation|TOSSGAPS: False out_order: ALIGNED |
name: value name: value |
rgClustal_testin_prot.fasta value |