Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_nmds/mothur_nmds/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_nmds/mothur_nmds/1.36.1.0 |
mothur_nmds |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$dist' dist.dat && ln -s '$axes' axes.dat && echo 'nmds( phylip=dist.dat #if $axes: ,axes=axes.dat #end if ,mindim=$mindim #if $maxdim >= $mindim: ,maxdim=$maxdim #end if ,iters=$iters ,maxiters=$maxiters ## Mothur can't cope with scientific notation #set epsilon_decimal = "{:.12f}".format(float($epsilon)) ,epsilon=$epsilon_decimal )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
dist: amazon.dist axes: amazon.pcoa.axes mindim: 1 maxdim: 2 iters: 10 maxiters: 500 epsilon: 1e-12 savelog: True |
name: value name: value name: value name: value |
amazon.dist amazon.pcoa.axes value |