Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.1.0.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.0.1.0 (this tool) |
deeptools_compute_matrix |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
python | 2.7.10 | package |
computeMatrix | not provided | binary |
deepTools | 2.0.1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
regionsFiles_0|regionsFile: computeMatrix1.bed advancedOpt|showAdvancedOpt: yes mode|mode_select: reference-point mode|beforeRegionStartLength: 10 advancedOpt|skipNAs: False scoreFileName: bamCoverage_result4.bw advancedOpt|averageTypeBins: sum mode|afterRegionStartLength: 10 advancedOpt|sortUsing: sum advancedOpt|binSize: 10 |
outFileName: computeMatrix_result1.gz |
computeMatrix1.bed bamCoverage_result4.bw computeMatrix_result1.gz |
Test-2 |
regionsFiles_0|regionsFile: computeMatrix2.bed advancedOpt|showAdvancedOpt: yes mode|mode_select: reference-point mode|beforeRegionStartLength: 10 scoreFileName: computeMatrix2.bw mode|afterRegionStartLength: 10 advancedOpt|binSize: 10 |
outFileName: computeMatrix_result2.gz |
computeMatrix2.bed computeMatrix2.bw computeMatrix_result2.gz |
Test-3 |
scoreFileName: computeMatrix2.bw regionsFiles_0|regionsFile: computeMatrix2.bed mode|mode_select: scale-regions advancedOpt|showAdvancedOpt: yes |
outFileName: computeMatrix_result3.gz |
computeMatrix2.bed computeMatrix2.bw computeMatrix_result3.gz |