| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.3.2.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.3.0.0.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.2.1.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.2.0.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.1.2.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.1.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.7.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.4.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.4.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.3.6.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.3.5.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.2.3.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.2.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.1.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.0.1.0 |
| deeptools_compute_matrix |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| deeptools | 3.3.0 | package |
| samtools | 1.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
mode|mode_select: reference-point advancedOpt|showAdvancedOpt: yes advancedOpt|sortUsing: sum multibigwig_conditional|bigwigfiles: bamCoverage_result4.bw regionsFiles_0|regionsFile: computeMatrix1.bed mode|beforeRegionStartLength: 10 advancedOpt|averageTypeBins: sum mode|afterRegionStartLength: 10 advancedOpt|binSize: 10 |
attributes: name |
computeMatrix1.bed bamCoverage_result4.bw name |
| Test-2 |
mode|mode_select: reference-point advancedOpt|showAdvancedOpt: yes multibigwig_conditional|bigwigfiles: computeMatrix2.bw regionsFiles_0|regionsFile: computeMatrix2.bed mode|beforeRegionStartLength: 10 mode|afterRegionStartLength: 10 advancedOpt|binSize: 10 |
attributes: name |
computeMatrix2.bed computeMatrix2.bw name |
| Test-3 |
multibigwig_conditional|bigwigfiles: computeMatrix2.bw regionsFiles_0|regionsFile: computeMatrix2.bed mode|mode_select: scale-regions advancedOpt|showAdvancedOpt: yes |
attributes: name |
computeMatrix2.bed computeMatrix2.bw name |