| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.1.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.2.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.7.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.4.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.4.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.3.6.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.3.5.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.2.3.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.2.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.1.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.0.1.0 |
| deeptools_compute_matrix |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| deeptools | 3.0.2 | package |
| samtools | 1.7 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
advancedOpt|binSize: 10 regionsFiles_0|regionsFile: computeMatrix1.bed advancedOpt|showAdvancedOpt: yes mode|mode_select: reference-point mode|beforeRegionStartLength: 10 advancedOpt|averageTypeBins: sum mode|afterRegionStartLength: 10 advancedOpt|sortUsing: sum multibigwig_conditional|bigwigfiles: bamCoverage_result4.bw |
outFileName: computeMatrix_result1.gz |
computeMatrix1.bed bamCoverage_result4.bw computeMatrix_result1.gz |
| Test-2 |
advancedOpt|binSize: 10 regionsFiles_0|regionsFile: computeMatrix2.bed advancedOpt|showAdvancedOpt: yes mode|mode_select: reference-point mode|beforeRegionStartLength: 10 mode|afterRegionStartLength: 10 multibigwig_conditional|bigwigfiles: computeMatrix2.bw |
outFileName: computeMatrix_result2.gz |
computeMatrix2.bed computeMatrix2.bw computeMatrix_result2.gz |
| Test-3 |
regionsFiles_0|regionsFile: computeMatrix2.bed advancedOpt|showAdvancedOpt: yes mode|mode_select: scale-regions multibigwig_conditional|bigwigfiles: computeMatrix2.bw |
outFileName: computeMatrix_result3.gz |
computeMatrix2.bed computeMatrix2.bw computeMatrix_result3.gz |