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Repository revision

Revision: 4:f7ce32e13bc6

Repository 'effectivet3'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/effectivet3

Effective T3 tool metadata

Miscellaneous

Name: Effective T3

Description: Find bacterial effectors in protein sequences

Id: effectiveT3

Guid: toolshed.g2.bx.psu.edu/repos/peterjc/effectivet3/effectiveT3/0.0.12

Version: 0.0.12

Version command string: python /tmp/tmp-toolshed-ramoritsHD8OWh/tools/effectiveT3/effectiveT3.py --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/peterjc/effectivet3/effectiveT3/0.0.13

toolshed.g2.bx.psu.edu/repos/peterjc/effectivet3/effectiveT3/0.0.12 (this tool)

toolshed.g2.bx.psu.edu/repos/peterjc/effectivet3/effectiveT3/0.0.11

toolshed.g2.bx.psu.edu/repos/peterjc/effectivet3/effectiveT3/0.0.10

toolshed.g2.bx.psu.edu/repos/peterjc/effectivet3/effectiveT3/0.0.8

effectiveT3

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

effectiveT3

1.0.1

package

Functional tests

name

inputs

outputs

required files

Test-1

fasta_file: four_human_proteins.fasta
module: animal
type: selective

tabular_file: four_human_proteins.effectiveT3.tabular

four_human_proteins.fasta
four_human_proteins.effectiveT3.tabular

Test-2

fasta_file: empty.fasta
module: plant
type: sensistive

tabular_file: empty_effectiveT3.tabular

empty.fasta
empty_effectiveT3.tabular