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psortb tool metadata

Miscellaneous

Name: psortb

Description: Determines sub-cellular localisation of bacterial/archaeal protein sequences

Id: Psortb

Guid: toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/Psortb/0.0.10

Version: 0.0.10

Version command string: python $__tool_directory__/psortb.py --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/Psortb/0.0.10 (this tool)

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/Psortb/0.0.9

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/Psortb/0.0.7

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/Psortb/0.0.5

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/Psortb/0.0.3

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/Psortb/0.0.1

Psortb

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

psort

not provided

package

Additional information about this tool

Command:

python $__tool_directory__/psortb.py "\$GALAXY_SLOTS" '$type' '$long' '$cutoff' '$divergent' '$sequence' '$outfile'

Interpreter: None

Forces a history refresh: False

Parallelism

Method: basic

split_inputs: fasta_file

split_mode: to_size

split_size: 2000

merge_outputs: tabular_file

Functional tests

name

inputs

outputs

required files

Test-1

sequence: empty.fasta
long: terse

name: value

empty.fasta
value

Test-2

sequence: k12_ten_proteins.fasta
long: terse

name: value

k12_ten_proteins.fasta
value