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Repository revision

Revision: 23:e1996f0f4e85

Repository 'tmhmm_and_signalp'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp

Promoter 2.0 tool metadata

Miscellaneous

Name: Promoter 2.0

Description: Find eukaryotic PolII promoters in DNA sequences

Id: promoter2

Guid: toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/promoter2/0.0.13

Version: 0.0.13

Version command string: python $__tool_directory__/promoter2.py --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/promoter2/0.0.13 (this tool)

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/promoter2/0.0.1

promoter2

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

promoter

not provided

package

Additional information about this tool

Command:

python $__tool_directory__/promoter2.py "\$GALAXY_SLOTS" '$fasta_file' '$tabular_file'

Interpreter: None

Forces a history refresh: False

Parallelism

Method: basic

split_inputs: fasta_file

split_mode: to_size

split_size: 2000

merge_outputs: tabular_file

Functional tests

name

inputs

outputs

required files

Test-1

fasta_file: Adenovirus.fasta

name: value

Adenovirus.fasta
value

Test-2

fasta_file: empty.fasta

name: value

empty.fasta
value