Galaxy |

SignalP 3.0 tool metadata

Miscellaneous

Name: SignalP 3.0

Description: Find signal peptides in protein sequences

Id: signalp3

Guid: toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/signalp3/0.0.20

Version: 0.0.20

Version command string: python $__tool_directory__/signalp3.py --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/signalp3/0.0.20 (this tool)

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/signalp3/0.0.19

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/signalp3/0.0.15

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/signalp3/0.0.14

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/signalp3/0.0.1

signalp3

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

signalp

not provided

package

Additional information about this tool

Command:

python $__tool_directory__/signalp3.py $organism $truncate "\$GALAXY_SLOTS" '$fasta_file' '$tabular_file'

Interpreter: None

Forces a history refresh: False

Parallelism

Method: basic

split_inputs: fasta_file

split_mode: to_size

split_size: 2000

merge_outputs: tabular_file

Functional tests

name

inputs

outputs

required files

Test-1

fasta_file: four_human_proteins.fasta
organism: euk
truncate: 0

name: value

four_human_proteins.fasta
value

Test-2

fasta_file: empty.fasta
organism: euk
truncate: 60

name: value

empty.fasta
value

Test-3

fasta_file: empty.fasta
organism: gram+
truncate: 80

name: value

empty.fasta
value

Test-4

fasta_file: empty.fasta
organism: gram-
truncate: 0

name: value

empty.fasta
value

Test-5

fasta_file: rxlr_win_et_al_2007.fasta
organism: euk
truncate: 70

name: value

rxlr_win_et_al_2007.fasta
value