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Repository revision

Revision: 16:7de64c8b258d

Repository 'tmhmm_and_signalp'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp

psortb tool metadata

Miscellaneous

Name: psortb

Description: Determines sub-cellular localisation of bacterial/archaeal protein sequences

Id: Psortb

Guid: toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/Psortb/0.0.3

Version: 0.0.3

Version command string: python /tmp/tmp-toolshed-ramoritsaOadTa/tools/protein_analysis/psortb.py --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/Psortb/0.0.5

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/Psortb/0.0.3 (this tool)

toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/Psortb/0.0.1

Psortb

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

psort

not provided

binary

Functional tests

name

inputs

outputs

required files

Test-1

sequence: empty.fasta
long: terse

outfile: empty_psortb_terse.tabular

empty.fasta
empty_psortb_terse.tabular

Test-2

sequence: k12_ten_proteins.fasta
long: terse

outfile: k12_ten_proteins_psortb_p_terse.tabular

k12_ten_proteins.fasta
k12_ten_proteins_psortb_p_terse.tabular