Repository revision
0:06dea02a2a39

Repository 'nupop_0.1'

NuPoP tool metadata
Miscellaneous
NuPoP
Predict nucleosome positioning for DNA sequences of any length
nupop_0.1
toolshed.g2.bx.psu.edu/repos/vipints/nupop_0.1/nupop_0.1/0.1
0.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/vipints/nupop_0.1/nupop_0.1/0.1 (this tool)
nupop_0.1
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Additional information about this tool
NuPoP.py
     $fasta_input
     $linker_length
     $order_mm
     $linker_update
     $species
	 #if $types.format_type == "text":
		 text $np_text $np_text.extra_files_path
	 #elif $types.format_type == "wig":
		 wig $np_wig $np_wig.extra_files_path
	 #end if
     > $Log_File
  
python
False
False
Functional tests
name inputs outputs required files
Test-1 fasta_input: test_nupop_chr1.fa
linker_length: 100
order_mm: 1
linker_update: 0
species: 1
format_type: text
format_type: wig
np_text: None
np_wig: None
test_nupop_chr1.fa