| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_gc_bias/deeptools_compute_gc_bias/2.2.3.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_gc_bias/deeptools_compute_gc_bias/2.2.2.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_gc_bias/deeptools_compute_gc_bias/2.1.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_gc_bias/deeptools_compute_gc_bias/2.0.1.0 |
| deeptools_compute_gc_bias |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python | 2.7.10 | package |
| computeGCBias | not provided | binary |
| deepTools | 2.2.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
image_format: none source|input1: sequence.2bit advancedOpt|showAdvancedOpt: yes region: chr2L bamInput: paired_chr2L.bam effectiveGenomeSize|effectiveGenomeSize_opt: specific advancedOpt|regionSize: 1 advancedOpt|sampleSize: 10 source|ref_source: history effectiveGenomeSize|effectiveGenomeSize: 23011544 |
outFileName: computeGCBias_result1.tabular |
paired_chr2L.bam sequence.2bit computeGCBias_result1.tabular |