| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.3.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.3.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.3.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.18.0.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.12.5.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.12.4.0 |
| fastp |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| fastp | 0.19.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
single_paired|single_paired_selector: single single_paired|in1: R1.fq |
attributes: name attributes: name |
R1.fq name |
| Test-2 |
single_paired|paired_input: paired collection single_paired|single_paired_selector: paired_collection |
attributes: name |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq name |
| Test-3 |
single_paired|adapter_trimming_options|adapter_sequence1: ATCG single_paired|single_paired_selector: single single_paired|in1: R1.fq |
attributes: name |
R1.fq name |
| Test-4 |
single_paired|in1: R1.fq single_paired|single_paired_selector: single read_mod_options|umi_processing|umi_len: 8 read_mod_options|umi_processing|umi_loc: read1 read_mod_options|umi_processing|umi: True |
attributes: name |
R1.fq name |
| Test-5 |
single_paired|in1: R1.fq single_paired|single_paired_selector: single read_mod_options|umi_processing|umi_len: 12 read_mod_options|umi_processing|umi_loc: read1 read_mod_options|umi_processing|umi: True |
attributes: name |
R1.fq name |
| Test-6 |
single_paired|in2: bwa-mem-fastq2.fq single_paired|single_paired_selector: paired single_paired|in1: bwa-mem-fastq1.fq |
attributes: name attributes: name |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq name |
| Test-7 |
read_mod_options|umi_processing|umi: True single_paired|in2: bwa-mem-fastq2.fq single_paired|single_paired_selector: paired read_mod_options|umi_processing|umi_loc: read1 single_paired|in1: bwa-mem-fastq1.fq read_mod_options|umi_processing|umi_len: 8 |
attributes: name attributes: name |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq name |
| Test-8 |
read_mod_options|umi_processing|umi: True single_paired|in2: bwa-mem-fastq2.fq single_paired|single_paired_selector: paired read_mod_options|umi_processing|umi_loc: read2 single_paired|in1: bwa-mem-fastq1.fq read_mod_options|umi_processing|umi_len: 8 |
attributes: name attributes: name |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq name |
| Test-9 |
output_options|report_html: False output_options|report_json: True single_paired|single_paired_selector: single single_paired|in1: R1.fq |
attributes: name attributes: name |
R1.fq name |
| Test-10 |
read_mod_options|polyg_tail_trimming|poly_g_min_len: 10 single_paired|single_paired_selector: single read_mod_options|polyg_tail_trimming|trimming_select: -g single_paired|in1: R1.fq.gz |
attributes: name |
R1.fq.gz name |