| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.12.5.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.12.4.0 (this tool) |
| fastp |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| fastp | 0.12.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
single_paired|single_paired_selector: single single_paired|in1: R1.fq |
out1: out1.fq |
R1.fq out1.fq |
| Test-2 |
single_paired|adapter_trimming_options|adapter_sequence1: ATCG single_paired|single_paired_selector: single single_paired|in1: R1.fq |
out1: out_a.fq |
R1.fq out_a.fq |
| Test-3 |
umi_processing|umi_len: 8 single_paired|single_paired_selector: single umi_processing|umi_loc: read1 umi_processing|umi: True single_paired|in1: R1.fq |
out1: out2.fq |
R1.fq out2.fq |
| Test-4 |
umi_processing|umi_len: 12 single_paired|single_paired_selector: single umi_processing|umi_loc: read1 umi_processing|umi: True single_paired|in1: R1.fq |
out1: out3.fq |
R1.fq out3.fq |
| Test-5 |
single_paired|single_paired_selector: paired single_paired|in2: bwa-mem-fastq2.fq single_paired|in1: bwa-mem-fastq1.fq |
out1: out_bwa1.fq out2: out_bwa2.fq |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq out_bwa1.fq out_bwa2.fq |
| Test-6 |
umi_processing|umi_loc: read1 umi_processing|umi: True single_paired|in2: bwa-mem-fastq2.fq umi_processing|umi_len: 8 single_paired|single_paired_selector: paired single_paired|in1: bwa-mem-fastq1.fq |
out1: out_bwa_umi_read1_1.fq out2: out_bwa_umi_read1_2.fq |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq out_bwa_umi_read1_1.fq out_bwa_umi_read1_2.fq |
| Test-7 |
umi_processing|umi_loc: read2 umi_processing|umi: True single_paired|in2: bwa-mem-fastq2.fq umi_processing|umi_len: 8 single_paired|single_paired_selector: paired single_paired|in1: bwa-mem-fastq1.fq |
out1: out_bwa_umi_read2_1.fq out2: out_bwa_umi_read2_2.fq |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq out_bwa_umi_read2_1.fq out_bwa_umi_read2_2.fq |
| Test-8 |
single_paired|single_paired_selector: single single_paired|in1: R1.fq |
out1: out1.fq report_html: None |
R1.fq out1.fq |
| Test-9 |
polyg_tail_trimming|trimming_select: -g single_paired|single_paired_selector: single polyg_tail_trimming|poly_g_min_len: 10 single_paired|in1: R1.fq.gz |
out1: out1.fq.gz report_html: None |
R1.fq.gz out1.fq.gz |