| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bicodon_counts_from_fasta/bicodon_counts_from_fasta/0.1.2 (this tool) |
| bicodon_counts_from_fasta |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| naltorfs | 0.1.2 | package |
| Additional information about this tool |
bicodon_counts_from_fasta.py
#if $ref.ref_source == 'cached':
--seq '${ref.ref_loc.fields.path}'
#elif $ref.ref_source == 'history':
--seq '${ref.ref_file}'
#end if
--taxid '$taxid'
--organelle '$organelle'
--division '$division'
--assembly '$assembly'
--species '$species'
--translation_table '$translation_table'
--codon_out '$codon_out'
--bicodon_out '$bicodon_out'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
ref|ref_file: naltorfs_fasta_out.fasta ref|ref_source: history taxid: 9606 organelle: genomic division: custom assembly: hg38 species: Homo sapiens translation_table: 1 |
name: value name: value |
naltorfs_fasta_out.fasta value |