Repository revision
3:528ba9c896e0

Repository 'fastq_paired_unpaired'
hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/fastq_paired_unpaired

Divide FASTQ file into paired and unpaired reads tool metadata
Miscellaneous
Divide FASTQ file into paired and unpaired reads
using the read name suffices
fastq_paired_unpaired
toolshed.g2.bx.psu.edu/repos/peterjc/fastq_paired_unpaired/fastq_paired_unpaired/0.0.7
0.0.7
python /tmp/tmp-toolshed-ramoritsVKSMfN/tools/fastq/fastq_paired_unpaired.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/peterjc/fastq_paired_unpaired/fastq_paired_unpaired/0.1.1
toolshed.g2.bx.psu.edu/repos/peterjc/fastq_paired_unpaired/fastq_paired_unpaired/0.0.7 (this tool)
toolshed.g2.bx.psu.edu/repos/peterjc/fastq_paired_unpaired/fastq_paired_unpaired/0.0.6
toolshed.g2.bx.psu.edu/repos/peterjc/fastq_paired_unpaired/fastq_paired_unpaired/0.0.5
toolshed.g2.bx.psu.edu/repos/peterjc/fastq_paired_unpaired/fastq_paired_unpaired/0.0.4
fastq_paired_unpaired
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Functional tests
name inputs outputs required files
Test-1 input_fastq: sanger-pairs-mixed.fastq
output_choice: separate
 output_singles: sanger-pairs-singles.fastq
output_forward: sanger-pairs-forward.fastq
output_reverse: sanger-pairs-reverse.fastq
 sanger-pairs-mixed.fastq
sanger-pairs-singles.fastq
sanger-pairs-forward.fastq
sanger-pairs-reverse.fastq
Test-2 input_fastq: sanger-pairs-mixed.fastq
output_choice: interleaved
 output_singles: sanger-pairs-singles.fastq
output_paired: sanger-pairs-interleaved.fastq
 sanger-pairs-mixed.fastq
sanger-pairs-singles.fastq
sanger-pairs-interleaved.fastq