| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mageck_count/mageck_count/0.5.7.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/mageck_count/mageck_count/0.5.7.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mageck_count/mageck_count/0.5.7 |
| mageck_count |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mageck | 0.5.7 | package |
| r-gplots | 3.0.1 | package |
| r-xtable | 1.8_2 | package |
| ghostscript | 9.22 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reads|format_select: files reads|sgrna_library_file: demo/demo2/library.txt reads|sample: test1.fastq.gz |
counts: out.count.fastq.txt |
test1.fastq.gz demo/demo2/library.txt out.count.fastq.txt |
| Test-2 |
reads|format_select: files reads|sgrna_library_file: demo/demo2/library.txt reads|sample_label: test1.fastq.gz reads|sample: demo/demo2/test1.fastq |
counts: out.count.fastq.txt |
demo/demo2/test1.fastq demo/demo2/library.txt out.count.fastq.txt |
| Test-3 |
reads|format_select: files reads|sgrna_library_file: demo/demo2/library.txt reads|sample: test1.bam |
counts: out.count.bam.txt |
test1.bam demo/demo2/library.txt out.count.bam.txt |
| Test-4 |
reads|format_select: files reads|sgrna_library_file: demo/demo2/library.txt out|logOpt: True out|unmappedOpt: True out|pdfreportOpt: True out|rscriptOpt: True out|countsummaryOpt: True reads|sample: test1.fastq.gz |
counts: out.count.fastq.txt countsummary: out.countsummary.txt log: out.count.log.txt unmapped: out.count.unmapped.txt pdfreport: out.countsummary.pdf |
test1.fastq.gz demo/demo2/library.txt out.count.fastq.txt out.countsummary.txt out.count.log.txt out.count.unmapped.txt out.countsummary.pdf |