| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.2.3 |
| toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.2.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.0.6 |
| toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.0.5 |
| toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.0.4 |
| toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.0.1 |
| seq_filter_by_id |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| biopython | 1.64 | package |
| Bio | not provided | python-module |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
id_opts|input_tabular: k12_hypothetical.tabular output_choice_cond|output_choice: pos id_opts|columns: 1 input_file: k12_ten_proteins.fasta |
output_pos: k12_hypothetical.fasta |
k12_ten_proteins.fasta k12_hypothetical.tabular k12_hypothetical.fasta |
| Test-2 |
adv_opts|adv_opts_selector: advanced input_file: k12_ten_proteins.fasta output_choice_cond|output_choice: pos id_opts|columns: 1 adv_opts|strip_suffix: true id_opts|input_tabular: k12_hypothetical_alt.tabular |
output_pos: k12_hypothetical.fasta |
k12_ten_proteins.fasta k12_hypothetical_alt.tabular k12_hypothetical.fasta |
| Test-3 |
id_opts|id_opts_selector: list id_opts|id_list: gi|16127999|ref|NP_414546.1| output_choice_cond|output_choice: pos input_file: k12_ten_proteins.fasta |
output_pos: k12_hypothetical.fasta |
k12_ten_proteins.fasta k12_hypothetical.fasta |
| Test-4 |
id_opts|id_opts_selector: list adv_opts|adv_opts_selector: advanced input_file: sanger-pairs-mixed.fastq output_choice_cond|output_choice: pos id_opts|id_list: WTSI_1055_1a05 WTSI_1055_1g02 adv_opts|strip_suffix: true |
output_pos: sanger-sample.fastq |
sanger-pairs-mixed.fastq sanger-sample.fastq |
| Test-5 |
id_opts|id_opts_selector: tabular adv_opts|adv_opts_selector: advanced input_file: sanger-pairs-mixed.fastq adv_opts|strip_suffix: true output_choice_cond|output_choice: both id_opts|columns: 1 id_opts|input_tabular: sanger-pairs-names.tabular |
output_pos: sanger-pairs-mixed.fastq output_neg: empty_file.dat |
sanger-pairs-mixed.fastq sanger-pairs-names.tabular empty_file.dat |
| Test-6 |
adv_opts|adv_opts_selector: advanced input_file: sanger-pairs-mixed.fastq output_choice_cond|output_choice: both id_opts|columns: 1 adv_opts|strip_suffix: false id_opts|input_tabular: sanger-pairs-names.tabular |
output_pos: empty_file.dat output_neg: sanger-pairs-mixed.fastq |
sanger-pairs-mixed.fastq sanger-pairs-names.tabular empty_file.dat |