Repository revision
39:e56023008e36

Repository 'genome_diversity'
hg clone https://toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity

Filter SNPs tool metadata
Miscellaneous
Filter SNPs
: Discard some SNPs based on coverage, quality or spacing
gd_filter_gd_snp
toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_filter_gd_snp/1.2.0
1.2.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_filter_gd_snp/1.2.0 (this tool)
toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_filter_gd_snp/1.1.0
toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_filter_gd_snp/1.0.0
gd_filter_gd_snp
Requirements (dependencies defined in the <requirements> tag set)
name version type
gd_c_tools 0.1 package
Functional tests
name inputs outputs required files
Test-1 input_type|lo_quality: 30
input_type|hi_coverage: 1000
input_type|low_ind_cov: 3
input_type|lo_coverage: 0
input_type|p1_input: test_in/a.gd_indivs
input_type|input: test_in/sample.gd_snp
output: modify.gd_snp
test_in/sample.gd_snp
test_in/a.gd_indivs
test_out/modify_snp_table/modify.gd_snp