| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_split/samtools_split/1.15.1+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_split/samtools_split/1.15.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_split/samtools_split/1.13 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_split/samtools_split/1.9 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_split/samtools_split/1.3.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_split/samtools_split/1.1 |
| samtools_split |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.15.1 | package |
| Additional information about this tool |
##compute the number of ADDITIONAL threads to be used by samtools (-@)
addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
samtools split -f 'Read_Group_%!.bam'
#if $header:
-u '${output}:${header}'
#else:
-u '${output}'
#end if
-@ \$addthreads
'$input_bam'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_bam: phiX.bam |
name: value |
phiX.bam value |