| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/sicer/peakcalling_sicer/1.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/sicer/peakcalling_sicer/0.0.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/sicer/peakcalling_sicer/0.0.1 |
| peakcalling_sicer |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| SICER | 1.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_bed_file: chipseq_enriched.bed.gz input_control_file: None fix_off_by_one_errors: False redundancy_threshold: 1 window_size: 200 fragment_size: 150 effective_genome_fraction: 0.74 gap_size: 600 error_cut_off: 0.01 |
name: value name: value name: value name: value name: value name: value name: value |
chipseq_enriched.bed.gz value |
| Test-2 |
input_bed_file: chipseq_enriched.bed.gz input_control_file: chipseq_input.bed.gz fix_off_by_one_errors: False redundancy_threshold: 1 window_size: 200 fragment_size: 150 effective_genome_fraction: 0.74 gap_size: 600 error_cut_off: 0.01 |
name: value name: value name: value name: value name: value name: value name: value name: value name: value name: value name: value |
chipseq_enriched.bed.gz chipseq_input.bed.gz value |
| Test-3 |
input_bed_file: chipseq_enriched.bed.gz input_control_file: chipseq_input.bed.gz fix_off_by_one_errors: True redundancy_threshold: 1 window_size: 200 fragment_size: 150 effective_genome_fraction: 0.74 gap_size: 600 error_cut_off: 0.01 |
name: value name: value name: value name: value name: value name: value name: value name: value name: value name: value name: value |
chipseq_enriched.bed.gz chipseq_input.bed.gz value |
| Test-4 |
input_bed_file: chipseq_enriched.bed.gz input_control_file: None fix_off_by_one_errors: True redundancy_threshold: 1 window_size: 200 fragment_size: 150 effective_genome_fraction: 0.74 gap_size: 600 error_cut_off: 0.01 |
name: value name: value name: value name: value name: value name: value name: value |
chipseq_enriched.bed.gz value |