| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/varscan_copynumber/varscan_copynumber/2.4.3.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/varscan_copynumber/varscan_copynumber/2.4.3.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/varscan_copynumber/varscan_copynumber/2.4.3.0 |
| varscan_copynumber |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| varscan | 2.4.3 | package |
| gawk | 4.2.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
pileup|normal_pileup: N_Region_Chr1_CDKN2C.pileup.gz pileup|tumor_pileup: T_Region_Chr1_CDKN2C.pileup.gz pileup|pileup_select: separated |
attributes: name |
N_Region_Chr1_CDKN2C.pileup.gz T_Region_Chr1_CDKN2C.pileup.gz name |
| Test-2 |
pileup|pileup_select: combined pileup|combined_pileup: NT.pileup.gz |
attributes: name |
NT.pileup.gz name |