| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/pick_closed_reference_otus/pick_closed_reference_otus/1.9.1.0 (this tool) |
| pick_closed_reference_otus |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qiime | 1.9.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
taxonomy|taxo_map|taxonomy_fp: pick_closed_reference_otus/taxa.txt taxonomy|taxo_map|selector: history taxonomy|selector: taxonomy_map ref_seq|reference_fp: pick_closed_reference_otus/refseqs.fna ref_seq|selector: history parallel: False |
otu_table: basic_otu_table.biom |
pick_closed_reference_otus/refseqs.fna pick_closed_reference_otus/taxa.txt pick_closed_reference_otus/basic_otu_table.biom |
| Test-2 |
taxonomy|taxo_map|taxonomy_fp: pick_closed_reference_otus/taxa.txt taxonomy|taxo_map|selector: history taxonomy|selector: taxonomy_map parameter_fp: pick_closed_reference_otus/sortmerna_params.txt ref_seq|reference_fp: pick_closed_reference_otus/refseqs.fna ref_seq|selector: history parallel: False |
otu_table: sortmerna_otu_table.biom |
pick_closed_reference_otus/refseqs.fna pick_closed_reference_otus/taxa.txt pick_closed_reference_otus/sortmerna_params.txt pick_closed_reference_otus/sortmerna_otu_table.biom |
| Test-3 |
parallel: False ref_seq|reference_fp: pick_closed_reference_otus/refseqs.fna ref_seq|selector: history taxonomy|selector: assign_taxonomy |
otu_table: assign_taxonomy_otu_table.biom |
pick_closed_reference_otus/refseqs.fna pick_closed_reference_otus/assign_taxonomy_otu_table.biom |
| Test-4 |
parallel: False ref_seq|reference_fp: pick_closed_reference_otus/refseqs.fna ref_seq|selector: history taxonomy|selector: suppress_taxonomy_assignment |
otu_table: suppress_taxonomy_assignment_otu_table.biom |
pick_closed_reference_otus/refseqs.fna pick_closed_reference_otus/suppress_taxonomy_assignment_otu_table.biom |