Repository revision
29:ce2bb7841f17

Repository 'ncbi_sra_toolkit'
hg clone https://toolshed.g2.bx.psu.edu/repos/matt-shirley/ncbi_sra_toolkit

Extract reads tool metadata
Miscellaneous
in BAM format from NCBI SRA.
bam_dump
toolshed.g2.bx.psu.edu/repos/matt-shirley/ncbi_sra_toolkit/bam_dump/1.1.2
1.1.2
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/matt-shirley/ncbi_sra_toolkit/bam_dump/1.1.2 (this tool)
bam_dump
Requirements (dependencies defined in the <requirements> tag set)
name version type
sra_toolkit 2.4.5 package
samtools 1.2 package
Functional tests
name inputs outputs required files
Test-1 input|input_select: accession_number
region: 17:41243452-41277500
input|accession: SRR925743
output: bam_dump_result.bam
bam_dump_result.bam