| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/0.9.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/0.8.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/0.7.2 |
| salmon |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bzip2 | 1.0.6 | package |
| salmon | 0.8.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
refTranscriptSource|ownFile: transcripts.fasta single_or_paired|single_or_paired_opts: paired single_or_paired|input_mate1: reads_1.fastq single_or_paired|input_mate2: reads_2.fastq refTranscriptSource|TranscriptSource: history |
output_quant: None |
transcripts.fasta reads_1.fastq reads_2.fastq |
| Test-2 |
refTranscriptSource|ownFile: transcripts.fasta single_or_paired|single_or_paired_opts: paired single_or_paired|input_mate1: reads_1.fastq.gz single_or_paired|input_mate2: reads_2.fastq.gz refTranscriptSource|TranscriptSource: history |
output_quant: None |
transcripts.fasta reads_1.fastq.gz reads_2.fastq.gz |
| Test-3 |
single_or_paired|single_or_paired_opts: paired geneMap: gene_map.tab single_or_paired|input_mate1: reads_1.fastq single_or_paired|input_mate2: reads_2.fastq refTranscriptSource|TranscriptSource: history refTranscriptSource|ownFile: transcripts.fasta |
output_quant: None output_gene_quant: None |
transcripts.fasta reads_1.fastq reads_2.fastq gene_map.tab |