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Repository revision

Revision: 4:4687ecf0eb2d

Repository 'trinity_contig_exn50_statistic'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/trinity_contig_exn50_statistic

Compute contig Ex90N50 statistic and Ex90 transcript count tool metadata

Miscellaneous

Description: from a Trinity assembly

Id: trinity_contig_exn50_statistic

Guid: toolshed.g2.bx.psu.edu/repos/iuc/trinity_contig_exn50_statistic/trinity_contig_exn50_statistic/2.4.0.0

Version: 2.4.0.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/trinity_contig_exn50_statistic/trinity_contig_exn50_statistic/2.6.6

toolshed.g2.bx.psu.edu/repos/iuc/trinity_contig_exn50_statistic/trinity_contig_exn50_statistic/2.4.0.0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/trinity_contig_exn50_statistic/trinity_contig_exn50_statistic/2.2.0.0

trinity_contig_exn50_statistic

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

trinity

2.4.0

package

Functional tests

name

inputs

outputs

required files

Test-1

transcripts: count/contig_exn50_statistic/Trinity.fasta
matrix: count/contig_exn50_statistic/matrix.TMM.EXPR.matrix

output: ExN50.stats

count/contig_exn50_statistic/matrix.TMM.EXPR.matrix
count/contig_exn50_statistic/Trinity.fasta
count/contig_exn50_statistic/ExN50.stats