| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_slice_bam/samtools_slice_bam/2.0.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_slice_bam/samtools_slice_bam/2.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_slice_bam/samtools_slice_bam/0.0.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_slice_bam/samtools_slice_bam/0.0.1 |
| samtools_slice_bam |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
slice_method|input_interval: bam-slice.bed slice_method|slice_method_selector: bed input_bam: bam-slice-input.bam |
output_bam: bam-slice-test1.bam |
bam-slice-input.bam bam-slice.bed bam-slice-test1.bam |
| Test-2 |
slice_method|slice_method_selector: chr input_bam: bam-slice-input.bam slice_method|refs: chrM |
output_bam: bam-slice-test2.bam |
bam-slice-input.bam bam-slice-test2.bam |
| Test-3 |
slice_method|regions_0|start: 1 slice_method|slice_method_selector: man input_bam: bam-slice-input.bam slice_method|regions_0|chrom: chrM slice_method|regions_0|end: 1000 |
output_bam: bam-slice-test3.bam |
bam-slice-input.bam bam-slice-test3.bam |