| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: fuzznuc37/5.0.3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: fuzznuc37/5.0.1 |
| EMBOSS: fuzznuc37 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| emboss | 5.0.0 | package |
| perl | 5.26 | package |
| Additional information about this tool |
fuzznuc
-sequence '$input1'
$seq_qualifiers.sreverse1 $seq_qualifiers.snucleotide1 $seq_qualifiers.sprotein1 $seq_qualifiers.slower1 $seq_qualifiers.supper1
#if $seq_qualifiers.sbegin1
-sbegin1 '$seq_qualifiers.sbegin1'
#end if
#if $seq_qualifiers.send1
-send1 '$seq_qualifiers.send1'
#end if
-outfile '$out_file1'
$out_qualifiers.raccshow2 $out_qualifiers.rdesshow2 $out_qualifiers.rscoreshow2 $out_qualifiers.rusashow2
#if $out_qualifiers.rmaxall2
-rmaxall2 '$out_qualifiers.rmaxall2'
#end if
#if $out_qualifiers.rmaxseq2
-rmaxseq2 '$out_qualifiers.rmaxseq2'
#end if
-pattern '$pattern' -pmismatch '$mismatch' -rformat2 '$out_format1' -auto
-complement '$complement'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input1: 2.fasta pattern: AA mismatch: 0 complement: no out_format1: excel |
name: value |
2.fasta value |
| Test-2 |
input1: 2.fasta pattern: AA mismatch: 0 complement: no out_format1: excel seq_qualifiers|sbegin1: 100 seq_qualifiers|supper1: True out_qualifiers|rmaxseq2: 5 |
name: value |
2.fasta value |