Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: sixpack90/5.0.0+galaxy2 (this tool) |
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: sixpack90/5.0.0.1 |
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: sixpack90/5.0.0 |
EMBOSS: sixpack90 |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
emboss | 5.0.0 | package |
perl | 5.26 | package |
Additional information about this tool |
sixpack -sequence '$input1' -outfile '$ofile1' -outseq '$ofile2' -table $table -firstorf $firstorf -lastorf $lastorf -mstart $mstart -reverse $reverse -orfminsize $orfminsize #if str($uppercase): -uppercase '$uppercase' #end if -number $number -width $width -length $length -margin $margin -name $disp_name -description $description -offset $offset -html $html_out1 -osformat $out_format2 -auto
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input1: 2.fasta table: 0 firstorf: no lastorf: no mstart: no reverse: no orfminsize: 1 uppercase: number: no width: 60 length: 0 margin: 10 disp_name: no description: no offset: 1 html_out1: no out_format2: fasta |
name: value name: value |
2.fasta value |