| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/sickle/sickle/1.33.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/sickle/sickle/1.33.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/sickle/sickle/1.33 |
| sickle |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| sickle-trim | 1.33 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
readtype|single_or_paired: pe_combo readtype|input_combo: test.fastq qual_threshold: 3 |
attributes: name attributes: name |
test.fastq name |
| Test-2 |
readtype|output_n: True readtype|input_combo: test.fastq readtype|single_or_paired: pe_combo qual_threshold: 3 |
attributes: name |
test.fastq name |
| Test-3 |
readtype|input_paired2: test.r.fastq readtype|single_or_paired: pe_sep readtype|input_paired1: test.f.fastq qual_threshold: 3 |
attributes: name attributes: name attributes: name |
test.f.fastq test.r.fastq name |
| Test-4 |
readtype|input_paired2: test.r.fastq.gz readtype|single_or_paired: pe_sep readtype|input_paired1: test.f.fastq.gz qual_threshold: 3 |
attributes: name attributes: name attributes: name |
test.f.fastq.gz test.r.fastq.gz name |
| Test-5 |
readtype|input_paired: paired collection readtype|single_or_paired: pe_collection qual_threshold: 3 |
attributes: name |
test.f.fastq test.r.fastq name |
| Test-6 |
readtype|input_paired: paired collection readtype|single_or_paired: pe_collection qual_threshold: 3 |
attributes: name |
test.f.fastq.gz test.r.fastq.gz name |